26th May 2022
9am - 5pm
Instructors: Clare Adams, Murray Cadzow, Patricia Haden
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Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.
For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".
Who: The course is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.
Where: Online. Get directions with OpenStreetMap or Google Maps.
When: 26th May 2022. Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).
Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:
Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.
Contact: Please email carpentries@otago.ac.nz for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
Please be sure to complete these surveys before and after the workshop.
Before starting | Pre-workshop survey |
Morning | Introduction to R |
Afternoon | Continuation of R: Data analysis and Visualization |
Post-workshop | Post-workshop survey |
To participate in a Data Carpentry workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.
tidyverse
If you already have R and RStudio installed
- Open RStudio, and click on “Help” > “Check for updates”. If a new version is available, quit RStudio, and download the latest version for RStudio.
To check which version of R you are using, start RStudio and the first thing that appears in the console indicates the version of R you are running. Alternatively, you can type
sessionInfo()
, which will also display which version of R you are running. Go on the CRAN website and check whether a more recent version is available. If so, please download and install it. You can check here for more information on how to remove old versions from your system if you wish to do so.- Follow the steps in the instructions for everyone at the bottom of this page.
If you don’t have R and RStudio installed
- Download R from the CRAN website.
- Run the
.exe
file that was just downloaded- Go to the RStudio download page
- Under Installers select RStudio x.yy.zzz - Windows Vista/7/8/10 (where x, y, and z represent version numbers)
- Double click the file to install it
Once it’s installed, open RStudio to make sure it works and you don’t get any error messages
- Follow the steps in the instructions for everyone at the bottom of this page.
If you already have R and RStudio installed
- Open RStudio, and click on “Help” > “Check for updates”. If a new version is available, quit RStudio, and download the latest version for RStudio.
- To check the version of R you are using, start RStudio and the first thing that appears on the terminal indicates the version of R you are running. Alternatively, you can type
sessionInfo()
, which will also display which version of R you are running. Go on the CRAN website and check whether a more recent version is available. If so, please download and install it.- Follow the steps in the instructions for everyone at the bottom of this page.
If you don’t have R and RStudio installed
- Download R from the CRAN website.
- Select the
.pkg
file for the latest R version- Double click on the downloaded file to install R
- It is also a good idea to install XQuartz (needed by some packages)
- Go to the RStudio download page
- Under Installers select RStudio x.yy.zzz - Mac OS X 10.6+ (64-bit) (where x, y, and z represent version numbers)
- Double click the file to install RStudio
Once it’s installed, open RStudio to make sure it works and you don’t get any error messages.
- Follow the steps in the instructions for everyone at the bottom of this page.
sudo apt-get install r-base
, and for Fedora sudo yum install R
), but we
don’t recommend this approach as the versions provided by this are
usually out of date. In any case, make sure you have at least R 3.5.1.sudo dpkg -i
rstudio-x.yy.zzz-amd64.deb
at the terminal).tidyverse
package. Start RStudio by double-clicking the icon and then type:
install.packages("tidyverse")
. You can also do this by going to Tools -> Install Packages and
typing the names of the packages you want to install, separated by a comma.